constructGseaResultTable: Builds the table of GSEA statistics to present to the user

In lianos/multiGSEA.shiny: Provides shiny components to visualize multilGSEA results

Description

The application will present the set of gene sets that pass a given fdr for a given method as a central piece of the UI. This function accepts those to arguments and prepares the statistics generated from the analysis for display.

Usage

constructGseaResultTable(mg, method, fdr, prioritize = c("h"))

Arguments

mg	MultiGSEAResult object
method	the method to show statistics for
fdr	the FDR cut off to present statistics for
prioritize	the preffered collections to put at the top of the list. The collection column of the table is turned into a factor and for more usful display with datatable's filter. Specifcying collections here will put those collections at the front of the factor levels and therofre prioritize their display in the select dropdown for the filter

Value

a data.table of the statistics that match the filtering criteria. A 0-row data.table is returned if nothing passes.

lianos/multiGSEA.shiny documentation built on Sept. 15, 2020, 10:45 p.m.