reactiveGeneSetDb: A ReactiveGeneSetDb for use in the shiiny world.

In lianos/multiGSEA.shiny: Provides shiny components to visualize multilGSEA results

Description

This can be instantiated from a "static" or "reactive" GeneSetDb object. It allows users to customize which genesets are active by:

Usage

reactiveGeneSetDb(
  input,
  output,
  session,
  gdb,
  min.gs.size = 2L,
  max.gs.size = Inf,
  default_collections = NULL,
  ...
)

Arguments

gdb	A static or reactive GeneSetDb object
min.gs.size, max.gs.size	the default minimum and maximum geneset size set in the UI when 'gdb' is first loaded or changes (when reactive)

Details

1. Filtering out entire collections; and 2. Filtering genesets based on min and max (gene) size.

This should be in mutliGSEA.shiny, but is developed here for now to make it easier to develop within the FacieAnalysis shiny world.

lianos/multiGSEA.shiny documentation built on Sept. 15, 2020, 10:45 p.m.