plot.multiple: Plot distribution of somatic mutations of multiple genes.

In liliulab/gust: Genes Under Selection In Tumors

Plot distribution of somatic mutations of multiple genes.

Description

Plot distribution of somatic mutations of multiple genes.

Usage

## S3 method for class 'multiple'
plot(multiple, par = F, bw = 5, side = 1)

Arguments

multiple:	A data frame. Each row contains a gene symbol, a folder, a prefix and an optional class label.
par:	A boolean indicating if using current grid arrangement. Default is TRUE.
bw:	bandwidth for density estimate. Default is 5.
main:	title of the plot.
side:	side to plot the protein position.

Value

A data frame from the check.gene.mut() function

Examples

df=data.frame(rbind(c('TP53', './examples', 'TCGA.ACC', 'TSG'), c('CTNNB1', './examples/', 'TCGA.ACC', 'OG'), c('TTN', './examples/', 'TCGA.ACC', 'PG'))); m=plot.multiple(df)

liliulab/gust documentation built on Aug. 30, 2022, 1:42 a.m.