plot.this.one: Plot distribution of somatic mutations of a gene.

In liliulab/gust: Genes Under Selection In Tumors

Plot distribution of somatic mutations of a gene.

Description

Plot distribution of somatic mutations of a gene.

Usage

## S3 method for class 'this.one'
plot(symbol, folder, prefix, par = F, bw = 5,
  main = "", side = 1)

Arguments

symbol:	A gene symbol.
folder:	A folder containing a "prefix.mut.summary.txt" file and a "prefix.symbol_2_cds_id.txt" file.
prefix:	A prefix string used to label the files. Usually, it contains TCGA.tumor_abbreviation.
par:	A boolean indicating if using current grid arrangement. Default is TRUE.
bw:	bandwidth for density estimate. Default is 5.
main:	title of the plot.
side:	side to plot the protein position.

Value

A data frame from the check.gene.mut() function

Examples

m=plot.this.one('TP53', './examples/', 'TCGA.ACC')

liliulab/gust documentation built on Aug. 30, 2022, 1:42 a.m.