check.gene.mut: Retreve somatic mutations of a gene from one or more tumor...
In liliulab/gust: Genes Under Selection In Tumors
View source: R/r-functions.selection.R
check.gene.mut R Documentation
Retreve somatic mutations of a gene from one or more tumor types.
Description
Retreve somatic mutations of a gene from one or more tumor types.
Usage
check.gene.mut(gene.symbol, folder, prefix)
Arguments
gene.symbol:
A gene symbol.
folder:
A folder containing a "prefix.mut.summary.txt" file and a "prefix.symbol_2_cds_id.txt" file.
prefix:
A prefix string used to label the files. Usually, it contains TCGA.tumor_abbreviation.
Value
A list with three elements: the first element is a data frame with mutations counts aggregated on protein level; the second element is a data frame with mutations counts aggregated on nucleotide level; the third element is the Ensembl transcript ID.
liliulab/gust documentation built on Aug. 30, 2022, 1:42 a.m.
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View source: R/r-functions.selection.R
| check.gene.mut | R Documentation |
Retreve somatic mutations of a gene from one or more tumor types.
Description
Retreve somatic mutations of a gene from one or more tumor types.
Usage
check.gene.mut(gene.symbol, folder, prefix)
Arguments
gene.symbol: |
A gene symbol. |
folder: |
A folder containing a "prefix.mut.summary.txt" file and a "prefix.symbol_2_cds_id.txt" file. |
prefix: |
A prefix string used to label the files. Usually, it contains TCGA.tumor_abbreviation. |
Value
A list with three elements: the first element is a data frame with mutations counts aggregated on protein level; the second element is a data frame with mutations counts aggregated on nucleotide level; the third element is the Ensembl transcript ID.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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