API for linnykos/multiomicCCA
Tilted CCA
| Global functions | |
|---|---|
| .adjust_colors | Source code |
| .angle_between_vectors | Source code |
| .angle_from_vector | Source code |
| .append_rowcolnames | Source code |
| .arrange_gridvalues | Source code |
| .cca | Man page Source code |
| .check_svd | Source code |
| .colorRamp_custom | Source code |
| .combine_two_named_lists | Source code |
| .common_decomposition | Source code |
| .compute_attempted_decomposition | Source code |
| .compute_cca_aggregate_matrix | Man page Source code |
| .compute_common_snn_hardclustering | Source code |
| .compute_common_snn_softclustering | Source code |
| .compute_distinct_score | Man page Source code |
| .compute_laplacian_basis | Source code |
| .compute_matrix_mean | Source code |
| .compute_matrix_sd | Source code |
| .compute_metacell_splits | Source code |
| .compute_metacells | Source code |
| .compute_prob_mat | Man page Source code |
| .compute_quadratic | Source code |
| .compute_radian | Source code |
| .compute_unnormalized_scores | Man page Source code |
| .construct_celltype_subsample | Source code |
| .construct_circle | Source code |
| .construct_grid | Source code |
| .construct_snn_from_tcca | Source code |
| .convert_common_score_to_mat | Source code |
| .convert_factor2list | Source code |
| .convert_list2factor | Source code |
| .convert_list2sparse | Source code |
| .cor_vectors | Source code |
| .create_cca_obj | Source code |
| .create_metacell_obj | Source code |
| .create_tcca_obj | Source code |
| .detect_gray | Source code |
| .enrichment | Source code |
| .enrichment_cell | Source code |
| .evaluate_radian | Source code |
| .find_radian | Source code |
| .fine_tuning_dimension | Source code |
| .form_consensusPCA_param | Source code |
| .form_metacells | Source code |
| .form_metacells_param | Source code |
| .form_multiSVD_param | Source code |
| .form_snn_mat | Source code |
| .form_snn_param | Source code |
| .form_tiltedcca_param | Source code |
| .generate_adjaceny_mat | Man page Source code |
| .generate_averaging_matrix | Source code |
| .generate_constr_l2 | Source code |
| .generate_indices_l2 | Source code |
| .generate_membership_matrix | Source code |
| .generate_objmat_l2 | Source code |
| .generate_objmat_l2_helper | Source code |
| .generate_objvec_l2 | Source code |
| .generate_objvec_l2_helper | Source code |
| .generic_variable_selection | Source code |
| .get_Dimred | Source code |
| .get_Dimred.default | Source code |
| .get_Dimred.multiSVD | Source code |
| .get_Laplacian | Source code |
| .get_SNN | Source code |
| .get_SVD | Source code |
| .get_SVD.Seurat | Source code |
| .get_SVD.default | Source code |
| .get_SVD.dgCMatrix | Source code |
| .get_SVD.matrix | Source code |
| .get_SVD.multiSVD | Source code |
| .get_SVD.svd | Source code |
| .get_defaultAssay | Source code |
| .get_defaultAssay.default | Source code |
| .get_defaultAssay.multiSVD | Source code |
| .get_metacell | Source code |
| .get_metacell.default | Source code |
| .get_metacell.metacell | Source code |
| .get_metacell.multiSVD | Source code |
| .get_param | Source code |
| .get_postDimred | Source code |
| .get_tCCAobj | Source code |
| .grassmann_distance | Source code |
| .intersect_clustering | Source code |
| .irlba_custom | Source code |
| .l2_selection_nn | Source code |
| .l2_selection_qp | Source code |
| .l2norm | Source code |
| .linear_regression | Source code |
| .matching_idx | Source code |
| .mult_mat_vec | Source code |
| .mult_vec_mat | Source code |
| .name_to_colhex | Source code |
| .nonzero_col | Source code |
| .normalize_svd | Source code |
| .pie_custom | Source code |
| .plot_decomposition_2d_inner | Source code |
| .position_from_circle | Source code |
| .project_vec2vec | Man page Source code |
| .remove_all_zeros_rowcol | Source code |
| .representation_2d | Source code |
| .rightmost_vector | Source code |
| .rotate | Source code |
| .rotate_matrix | Source code |
| .rpsectra_custom | Source code |
| .search_tilt_perc | Source code |
| .select_l2_cells | Source code |
| .select_minimum | Source code |
| .set_defaultAssay | Source code |
| .set_defaultAssay.default | Source code |
| .set_defaultAssay.multiSVD | Source code |
| .smooth_variable_selection_helper | Source code |
| .svd_in_sequence | Source code |
| .svd_safe | Source code |
| .tiltedCCA_common_score | Man page Source code |
| .translate_celltype | Source code |
| .var_select_compute_correlations | Source code |
| .var_select_compute_lm | Source code |
| .var_select_compute_predictions | Source code |
| compute_snns | Man page Source code |
| compute_synchrony | Man page Source code |
| consensus_pca | Man page Source code |
| construct_celltype_subsample | Man page Source code |
| create_SeuratDim | Man page Source code |
| create_multiSVD | Man page Source code |
| create_reducedSeuratObj | Source code |
| differential_expression | Man page Source code |
| fine_tuning | Man page Source code |
| form_metacells | Man page Source code |
| form_seurat_obj | Source code |
| generate_random_orthogonal | Man page Source code |
| generate_sbm_orthogonal | Man page Source code |
| plot_alignment | Man page Source code |
| plot_cell_enrichment | Man page Source code |
| plot_clisi | Man page Source code |
| plot_clisi_legend | Man page Source code |
| plot_decomposition_2d | Source code |
| plot_heatmat | Man page Source code |
| plot_scores | Man page Source code |
| plot_scores_heatmap.dcca | Man page Source code |
| plot_scores_heatmap.list | Man page Source code |
| plot_summary | Man page Source code |
| postprocess_cell_enrichment | Man page Source code |
| postprocess_cell_enrichment.default | Man page Source code |
| postprocess_cell_enrichment.multiSVD | Man page Source code |
| postprocess_depvalue | Man page Source code |
| postprocess_distinct_variable_selection | Source code |
| postprocess_graph_alignment | Source code |
| postprocess_marker_variables | Man page Source code |
| postprocess_modality_alignment | Man page Source code |
| postprocess_smooth_variable_selection | Source code |
| rotate_seurat_embeddings | Man page Source code |
| tiltedCCA | Man page Source code |
| tiltedCCA_decomposition | Man page Source code |
