plot_clisi: Making the plot for local enrichment
In linnykos/multiomicCCA: Tilted CCA

plot_clisi

R Documentation

Making the plot for local enrichment

Description

Making the plot for local enrichment

Usage

plot_clisi(
  local_1,
  local_2,
  col_vec = (scales::hue_pal())(nrow(local_1$common_clisi$membership_info)),
  l_bg = 75,
  c_bg = 50,
  alpha_bg = 0.5,
  xlab1 = "Distinct enrichment",
  xlab2 = "Distinct enrichment",
  ylab = "Common enrichment",
  main1 = "Modality 1",
  main2 = "Modality 2",
  ...
)

Arguments

`local_1`	output of `clisi_information` on one Modality
`local_2`	output of `clisi_information` on the other Modality
`col_vec`	vector of colors
`l_bg`	`l` parameter (luminosity, i.e., brightness) for individual cells
`c_bg`	`c` parameter (chroma, i.e., color intensity) for individual cells
`alpha_bg`	`alpha` parameter (color) for individual cells
`xlab1`	`xlab` for Modality 1
`xlab2`	`xlab` for Modality 2
`ylab`	`ylab` for the shared modality
`main1`	Title for plot corresponding to Modality 1
`main2`	Title for plot corresponding to Modality 2
`...`	extra parameters for `ggrepel::geom_text_repel`