alignment.mle.remove: alignment.mle.remove sequences
In lliu1871/phybase: Basic functions for phylogenetic analysis
alignment.mle.remove R Documentation
alignment.mle.remove sequences
Description
This function removes the sequences whose branch lengths in the ML tree is 5 times greater than the branch lengths in the reference tree, i.e., the concatenation tree. The new alignments are saved in the files .final.
Usage
alignment.mle.remove(path_raxml = "raxmlHPC", seqfiles, contreefile)
Arguments
path_raxml
the full path of program raxml
seqfiles
the input sequence files
contreefile
the concatenation tree file
Author(s)
Liang Liu
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| alignment.mle.remove | R Documentation |
alignment.mle.remove sequences
Description
This function removes the sequences whose branch lengths in the ML tree is 5 times greater than the branch lengths in the reference tree, i.e., the concatenation tree. The new alignments are saved in the files .final.
Usage
alignment.mle.remove(path_raxml = "raxmlHPC", seqfiles, contreefile)
Arguments
path_raxml |
the full path of program raxml |
seqfiles |
the input sequence files |
contreefile |
the concatenation tree file |
Author(s)
Liang Liu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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