alignment.trim: alignment.trim sequences
In lliu1871/phybase: Basic functions for phylogenetic analysis
alignment.trim R Documentation
alignment.trim sequences
Description
This function trims gappy regions in the alignment.
Usage
alignment.trim(path_trimal, inputfolder, outputfolder)
Arguments
path_trimal
the full path of program Trimal
inputfolder
inputfolder contains the sequence files of original alignments in phylip format; one gene per file
outputfolder
outputfolder contains the sequence files of trimmed alignments
Author(s)
Liang Liu
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| alignment.trim | R Documentation |
alignment.trim sequences
Description
This function trims gappy regions in the alignment.
Usage
alignment.trim(path_trimal, inputfolder, outputfolder)
Arguments
path_trimal |
the full path of program Trimal |
inputfolder |
inputfolder contains the sequence files of original alignments in phylip format; one gene per file |
outputfolder |
outputfolder contains the sequence files of trimmed alignments |
Author(s)
Liang Liu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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