dist.taxa: Calculate all pairwise distances among taxa in the tree
In lliu1871/phybase: Basic functions for phylogenetic analysis
dist.taxa R Documentation
Calculate all pairwise distances among taxa in the tree
Description
The function computes all pairwise distances among taxa in the tree.
Usage
dist.taxa(nodematrix, nspecies)
Arguments
nodematrix
the tree node matrix
nspecies
the number of taxa in the tree
Value
The function returns a distance matrix.
Author(s)
Liang Liu lliu@uga.edu
Examples
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00705):0.00929,O:0.01635):0.1,W:0.11635);"
nodematrix<-read.tree.nodes(treestr)$nodes
dist.taxa(nodematrix,5)
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| dist.taxa | R Documentation |
Calculate all pairwise distances among taxa in the tree
Description
The function computes all pairwise distances among taxa in the tree.
Usage
dist.taxa(nodematrix, nspecies)
Arguments
nodematrix |
the tree node matrix |
nspecies |
the number of taxa in the tree |
Value
The function returns a distance matrix.
Author(s)
Liang Liu lliu@uga.edu
Examples
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00705):0.00929,O:0.01635):0.1,W:0.11635);"
nodematrix<-read.tree.nodes(treestr)$nodes
dist.taxa(nodematrix,5)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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