control.mpest: generate a control file for mpest
In lliu1871/phybase: Basic functions for phylogenetic analysis
control.mpest R Documentation
generate a control file for mpest
Description
This function can generate a control file for mpest
Usage
control.mpest(genetreefile, ngene, randomseed=-1, nrun, speciesnames, outputfile)
Arguments
genetreefile
the gene tree file
ngene
the number of genes
randomseed
the default is -1; otherwise, a random seed will be generated
nrun
the number of runs; each run has a different starting point, and mp-est will find the tree with the maximum likelihood score across all runs
speciesnames
the names of species
outputfile
the name of the control file
Author(s)
Liang Liu
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| control.mpest | R Documentation |
generate a control file for mpest
Description
This function can generate a control file for mpest
Usage
control.mpest(genetreefile, ngene, randomseed=-1, nrun, speciesnames, outputfile)
Arguments
genetreefile |
the gene tree file |
ngene |
the number of genes |
randomseed |
the default is -1; otherwise, a random seed will be generated |
nrun |
the number of runs; each run has a different starting point, and mp-est will find the tree with the maximum likelihood score across all runs |
speciesnames |
the names of species |
outputfile |
the name of the control file |
Author(s)
Liang Liu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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