alignment.site.summary: summary statistics of sequences
In lliu1871/phybase: Basic functions for phylogenetic analysis
alignment.site.summary R Documentation
summary statistics of sequences
Description
This function calculates the number of segregating sites, informative sites, ambiguous sites (i.e., sites containing non-nucleotide characters) in the alignment.
Usage
alignment.site.summary(seqfile,format="phylip",is.cds=FALSE)
Arguments
seqfile
the input sequence files; one gene per file
format
format = phylip, fasta, nexus
is.cds
is it cds?
Author(s)
Liang Liu
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| alignment.site.summary | R Documentation |
summary statistics of sequences
Description
This function calculates the number of segregating sites, informative sites, ambiguous sites (i.e., sites containing non-nucleotide characters) in the alignment.
Usage
alignment.site.summary(seqfile,format="phylip",is.cds=FALSE)
Arguments
seqfile |
the input sequence files; one gene per file |
format |
format = phylip, fasta, nexus |
is.cds |
is it cds? |
Author(s)
Liang Liu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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