R/marker.R

In loosolab/wilson: Web-Based Interactive Omics Visualization

#' marker module UI representation
#'
#' @param id The ID of the modules namespace
#' @param label Set label of first element.
#'
#' @return A list with HTML tags from \code{\link[shiny]{tag}}
#'
#' @export
markerUI <- function(id, label = "Highlight/ Label Selected Features"){
  ns <- shiny::NS(id)

  shiny::tagList(
    shiny::selectInput(ns("highlight"), label = label, choices = c("Disabled", "Highlight", "Exclusive")),
    colorPickerUI(ns("color"), label = "Color", custom = TRUE),
    labelUI(ns("label"))

  )
}

#' marker module server logic
#'
#' @param input Shiny's input object.
#' @param output Shiny's output object.
#' @param session Shiny's session object.
#' @param clarion A clarion object. See \code{\link[wilson]{Clarion}}. (Supports reactive)
#'
#' @return A named list containing reactives (highlight, color, labelColumn, label, clarion).
#'
#' @export
marker <- function(input, output, session, clarion){
  # input preparation #####
  object <- shiny::reactive({
    # support reactive
    if (shiny::is.reactive(clarion)) {
      if (!methods::is(clarion(), "Clarion")) shiny::stopApp("Object of class 'Clarion' needed!")

      clarion()
    } else {
      if (!methods::is(clarion, "Clarion")) shiny::stopApp("Object of class 'Clarion' needed!")

      clarion
    }
  })

  # modules #####
  color <- shiny::callModule(colorPicker, "color")
  labeller <-  shiny::callModule(label, "label", data = shiny::reactive(object()$data), unique = FALSE)

  return(
    list(
      highlight = shiny::reactive(input$highlight),
      color = shiny::reactive(color()$palette),
      label_column = shiny::reactive(labeller()$selected),
      label = shiny::reactive(labeller()$label),
      clarion = object
    )
  )
}