degMV: Correlation of the standard desviation and the mean of the...
In lpantano/DEGreport: Report of DEG analysis

degMV

R Documentation

Correlation of the standard desviation and the mean of the abundance of a set of genes.

Description

Correlation of the standard desviation and the mean of the abundance of a set of genes.

Usage

degMV(group, pvalues, counts, sign = 0.01)

Arguments

`group`	Character vector with group name for each sample in the same order than counts column names.
`pvalues`	pvalues of DEG analysis.
`counts`	Matrix with counts for each samples and each gene.
`sign`	Defining the cutoff to label significant features. row number should be the same length than pvalues vector.

Value

ggplot2 object

Examples

data(humanGender)
library(DESeq2)
idx <- c(1:10, 75:85)
dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
  colData(humanGender)[idx,], design=~group)
dds <- DESeq(dds)
res <- results(dds)
degMV(colData(dds)[["group"]],
      res[, 4],
      counts(dds, normalized = TRUE))

lpantano/DEGreport documentation built on Feb. 28, 2024, 12:01 a.m.