degVar: Distribution of pvalues by standard desviation range
In lpantano/DEGreport: Report of DEG analysis
degVar R Documentation
Distribution of pvalues by standard desviation range
Description
This function pot the p-valyes distribution colored by
the quantiles of the standard desviation of count data.
Usage
degVar(pvalues, counts)
Arguments
pvalues
pvalues of DEG analysis
counts
Matrix with counts for each samples and each gene.
row number should be the same length than pvalues vector.
Value
ggplot2 object
Examples
data(humanGender)
library(DESeq2)
idx <- c(1:10, 75:85)
dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
colData(humanGender)[idx,], design=~group)
dds <- DESeq(dds)
res <- results(dds)
degVar(res[, 4], counts(dds))
lpantano/DEGreport documentation built on Feb. 28, 2024, 12:01 a.m.
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| degVar | R Documentation |
Distribution of pvalues by standard desviation range
Description
This function pot the p-valyes distribution colored by the quantiles of the standard desviation of count data.
Usage
degVar(pvalues, counts)
Arguments
pvalues |
pvalues of DEG analysis |
counts |
Matrix with counts for each samples and each gene. row number should be the same length than pvalues vector. |
Value
ggplot2 object
Examples
data(humanGender)
library(DESeq2)
idx <- c(1:10, 75:85)
dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
colData(humanGender)[idx,], design=~group)
dds <- DESeq(dds)
res <- results(dds)
degVar(res[, 4], counts(dds))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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