degPlotWide: Plot selected genes on a wide format

In lpantano/DEGreport: Report of DEG analysis

Plot selected genes on a wide format

Description

Plot selected genes on a wide format

Usage

degPlotWide(counts, genes, group, metadata = NULL, batch = NULL)

Arguments

counts	DESeq2::DESeqDataSet object or expression matrix
genes	character genes to plot.
group	character, colname in colData to color points and add different lines for each level
metadata	data.frame, information for each sample. Not needed if DESeq2::DESeqDataSet given as counts.
batch	character, colname in colData to shape points, normally used by batch effect visualization

Value

ggplot showing the expresison of the genes on the x axis

Examples

data(humanGender)
library(DESeq2)
idx <- c(1:10, 75:85)
dse <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
  colData(humanGender)[idx,], design=~group)
dse <- DESeq(dse)
degPlotWide(dse, rownames(dse)[1:10], group = "group")

lpantano/DEGreport documentation built on Feb. 28, 2024, 12:01 a.m.