sracipeCircuit-set: Initialize the circuit

In lusystemsbio/sRACIPE: Systems biology tool to simulate gene regulatory circuits

Initialize the circuit

Description

Initialize the circuit from a topology file or a data.frame A typical topology file looks like

Source	Target	Type
geneA	geneB	2
geneB	geneC	1
geneB	geneA	2

Here the regulation type is specified by number - activation: 1, inhibition: 2

Usage

sracipeCircuit(.object) <- value

## S4 replacement method for signature 'RacipeSE'
sracipeCircuit(.object) <- value

Arguments

.object	RacipeSE object
value	data.frame containing the circuit information

Value

data.frame

Related Functions

sracipeSimulate, sracipeKnockDown, sracipeOverExp, sracipePlotData

Examples

RacipeSet <- RacipeSE()
data("demoCircuit")
sracipeCircuit(RacipeSet) <- demoCircuit
sracipeCircuit(RacipeSet)
rm(RacipeSet, demoCircuit)

lusystemsbio/sRACIPE documentation built on Dec. 9, 2024, 8:25 a.m.