sracipeCircuit: Method to get the circuit

In lusystemsbio/sRACIPE: Systems biology tool to simulate gene regulatory circuits

Method to get the circuit

Description

The circuit file should contain three columns with headers, "Source" "Target" "Type" Here "Source" and "Target" are the names of the genes and "Type" refers to the regulation, "1" for TF activation and "2" for TF inhibition, "3" for degradation inhibition, "4" for degradation activation, "5" for signaling activation, and "6" for signaling inhibition.

Usage

sracipeCircuit(.object)

## S4 method for signature 'RacipeSE'
sracipeCircuit(.object)

Arguments

.object

RacipeSE object

Value

A dataframe

Examples

rs <- RacipeSE()
data("demoCircuit")
sracipeCircuit(rs) <- demoCircuit
circuitDataFrame <- sracipeCircuit(rs)
rm(rs, demoCircuit,circuitDataFrame)

lusystemsbio/sRACIPE documentation built on April 13, 2025, 5:56 p.m.