sracipePlotCircuit: Plot Gene Regulatory Circuit
In lusystemsbio/sRACIPE: Systems biology tool to simulate gene regulatory circuits

sracipePlotCircuit

R Documentation

Plot Gene Regulatory Circuit

Description

Plot Gene Regulatory Circuit to a file or output device using visNetwork. Edge color coding: 1-"blue", 2-"darkred", 3-"cyan", 4-"deeppink", 5-"blueviolet", 6-"darkorange"

Usage

sracipePlotCircuit(.object, plotToFile = FALSE, physics = TRUE)

## S4 method for signature 'RacipeSE'
sracipePlotCircuit(.object, plotToFile = TRUE, physics = TRUE)

Arguments

`.object`	RacipeSE object A list returned by `sracipeSimulate` function
`plotToFile`	(optional) logical. Default `FALSE`. Whether to save plots to a file.
`physics`	(optional) logical. Default `TRUE`. Whether or not to enable physics in the nodes of the visNetwork graph.

Value

circuit plot

Related Functions

sracipeSimulate, sracipeKnockDown, sracipeOverExp, sracipePlotData

Examples

data("demoCircuit")
## Not run: 
rSet <- sRACIPE::sracipeSimulate(circuit = demoCircuit, numModels = 20,
integrateStepSize = 0.1, simulationTime = 30)
sracipePlotCircuit(rSet, plotToFile = FALSE, physics = TRUE)
rm(rSet)

## End(Not run)

lusystemsbio/sRACIPE documentation built on Nov. 19, 2024, 9:07 a.m.