sracipeCombineRacipeSE: A method to combine RacipeSE objects with the same config

In lusystemsbio/sRACIPE: Systems biology tool to simulate gene regulatory circuits

A method to combine RacipeSE objects with the same config

Description

It is often the case that to save time, multiple simulations of the same topology with the same config file are run in parallel. However, one still wants to condense the results of the different simulations into one object. This method does that, combining the params, ics, and expressions of a list of objects into one. If convergence testing is done, convergence data and unique state counts are combined as well. Limit cycle data is combined too. The method validates the RacipeSE objects as having essentially identical configurations compared to the first object provided

Usage

sracipeCombineRacipeSE(.object)

## S4 method for signature 'list'
sracipeCombineRacipeSE(.object)

Arguments

.object

RacipeSE object generated by sracipeSimulate function.

Value

RacipeSE object

Related Functions

sracipeSimulate, sracipeKnockDown, sracipeOverExp, sracipePlotData

Examples

data("demoCircuit")
## Not run: 
  data(democircuit)
  for(i in 1:5){
    rSet <- sracipeSimulate(demoCircuit, numModels = 100,
                               numConvergenceTests = 20, nIC = 2)
    racipeList <- c(racipeList, results)
  }

  combinedObject <- sracipeCombineRacipeSE(racipeList)

## End(Not run)

lusystemsbio/sRACIPE documentation built on Dec. 9, 2024, 8:25 a.m.