sracipeUniqueStates: A method for grabbing unique states
In lusystemsbio/sRACIPE: Systems biology tool to simulate gene regulatory circuits

sracipeUniqueStates

R Documentation

A method for grabbing unique states

Description

This method selects the unique expression states for every model in an sRACIPE object. The method of evaluating uniqueness is the same as in the main sracipeSimulate function.Non-converged expressions are filtered out using the simulation convergence data. This method should only be used for deterministic simulations with nIC > 1.

Usage

sracipeUniqueStates(.object)

## S4 method for signature 'RacipeSE'
sracipeUniqueStates(.object)

Arguments

.object

RacipeSE object generated by sracipeSimulate function.

Value

list object. Element i of the list is a data frame containing the unique expressions of model i in the input RacipeSE object

Related Functions

sracipeSimulate, sracipeKnockDown, sracipeConvergeDist, sracipePlotData

Examples

data("demoCircuit")
## Not run: 
rSet <- sRACIPE::sracipeSimulate(circuit = demoCircuit, numModels = 20,
integrateStepSize = 0.1, numConvergenceTests = 30)
stateList <- sracipeUniqueStates(rSet)
comginedStates <- do.call(cbind, stateList)

## End(Not run)

lusystemsbio/sRACIPE documentation built on Nov. 19, 2024, 9:07 a.m.