lvclark/polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

Read depth data from genotyping-by-sequencing (GBS) or restriction site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian probability estimates of genotypes in polyploids or diploids. The genotype probabilities, or genotypes sampled from those probabilties, can then be exported for downstream analysis. 'polyRAD' is described by Clark et al. (2018) <doi:10.1101/380899>.

Getting started

Package details

AuthorLindsay V. Clark [aut, cre] (<>), U.S. National Science Foundation [fnd]
MaintainerLindsay V. Clark <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
lvclark/polyRAD documentation built on Nov. 8, 2018, 11:55 p.m.