CanDoGetWeightedMeanGeno: Check Whether 'GetWeightedMeanGenotypes' Can Be Run

In lvclark/polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

Check Whether GetWeightedMeanGenotypes Can Be Run

Description

This function is used internally by AddPCA, AddAlleleFreqByTaxa, and the internal function .alleleFreq to test whether GetWeightedMeanGenotypes can be run on a "RADdata" object.

Usage

CanDoGetWeightedMeanGeno(object, ...)

Arguments

object	A "RADdata" object.
...	Additional arguments (none implemented).

Value

A single Boolean value. To be TRUE, object$posteriorProb must be non-null, and either there must be only one possible ploidy, or object$ploidyChiSq must be non-null.

Author(s)

Lindsay V. Clark

See Also

AddGenotypePosteriorProb, AddPloidyChiSq

Examples

data(exampleRAD)

CanDoGetWeightedMeanGeno(exampleRAD)

exampleRAD <- AddAlleleFreqHWE(exampleRAD)
exampleRAD <- AddGenotypePriorProb_HWE(exampleRAD)
exampleRAD <- AddGenotypeLikelihood(exampleRAD)
exampleRAD <- AddPloidyChiSq(exampleRAD)
exampleRAD <- AddGenotypePosteriorProb(exampleRAD)

CanDoGetWeightedMeanGeno(exampleRAD)

lvclark/polyRAD documentation built on Jan. 15, 2024, 4:19 a.m.