exampleRAD: Miniature Datasets for Testing polyRAD Functions

Description Usage Format Source Examples

Description

exampleRAD and exampleRAD_mapping are two very small simulated "RADdata" datasets for testing polyRAD functions. Each has four loci. exampleRAD is a natural population of 100 individuals with a mix of diploid and tetraploid loci. exampleRAD_mapping is a diploid BC1 mapping population with two parents and 100 progeny. Msi01genes is a "RADdata" object with 585 taxa and 24 loci, containing real data from Miscanthus sinensis, obtained by using VCF2RADdata on the file Msi01genes.vcf.

Usage

1
2
3

Format

See the format described in "RADdata".

Source

Randomly generated using a script available in polyRAD/extdata/simulate_rad_data.R.

M. sinensis sequencing data available at https://www.ncbi.nlm.nih.gov//bioproject/PRJNA207721.

Examples

1
2
3
4
5
6

lvclark/polyRAD documentation built on May 22, 2018, 3:44 a.m.