Files in lvclark/polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/calculations.R R/classes_methods.R R/data_export.R R/data_import.R R/pipelines.R R/sort_isoloci.R README.md
data/exampleRAD.RData
data/exampleRAD_mapping.RData
inst/doc/HapMapClareMap1subset.fas.txt
inst/doc/HapMapClareMap1subset.hmc.txt
inst/doc/HapMapMsiSubset1.fas.txt
inst/doc/HapMapMsiSubset1.hmc.txt
inst/extdata/Msi01genes.vcf
inst/extdata/Msi01genes.vcf.bgz
inst/extdata/Msi01genes.vcf.bgz.tbi
inst/extdata/simulate_rad_data.R man/AddAlleleFreqByTaxa.Rd man/AddAlleleFreqHWE.Rd man/AddAlleleFreqMapping.Rd man/AddGenotypeLikelihood.Rd man/AddGenotypePosteriorProb.Rd man/AddGenotypePriorProb_ByTaxa.Rd man/AddGenotypePriorProb_HWE.Rd man/AddGenotypePriorProb_Mapping2Parents.Rd man/AddPCA.Rd man/AddPloidyChiSq.Rd man/AddPloidyLikelihood.Rd man/AddPriorTimesLikelihood.Rd man/CanDoGetWeightedMeanGeno.Rd man/ExportGAPIT.Rd man/GetLikelyGen.Rd man/GetTaxa.Rd man/GetWeightedMeanGenotypes.Rd man/IterateHWE.Rd man/MakeTasselVcfFilter.Rd man/OneAllelePerMarker.Rd man/PipelineMapping2Parents.Rd man/RADdata.Rd man/SetBlankTaxa.Rd man/SubsetByLocus.Rd man/SubsetByTaxon.Rd man/VCF2RADdata.Rd man/exampleRAD.Rd man/readHMC.Rd man/readStacks1.Rd man/readTagDigger.Rd
vignettes/HapMapClareMap1subset.fas.txt
vignettes/HapMapClareMap1subset.hmc.txt
vignettes/HapMapMsiSubset.fas.txt
vignettes/HapMapMsiSubset.hmc.txt
vignettes/HapMapMsiSubset1.fas.txt
vignettes/HapMapMsiSubset1.hmc.txt
vignettes/polyRADtutorial.Rnw
vignettes/polyRADtutorial.pdf
vignettes/subsetdata.py
lvclark/polyRAD documentation built on Feb. 18, 2018, 8:54 a.m.