Files in lvclark/polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/RcppExports.R R/calculations.R R/classes_methods.R R/data_export.R R/data_import.R R/overdispersion.R R/pipelines.R R/sort_isoloci.R README.md
data/Msi01genes.RData
data/exampleRAD.RData
data/exampleRAD_mapping.RData
inst/CITATION
inst/extdata/ClareMap_HapMap.fas.txt
inst/extdata/ClareMap_HapMap.hmc.txt
inst/extdata/ClareMap_alignments.csv
inst/extdata/Msi01genes.vcf
inst/extdata/Msi01genes.vcf.bgz
inst/extdata/Msi01genes.vcf.bgz.tbi
inst/extdata/exampleTASSEL_SAM.txt
inst/extdata/example_TagTaxaDist.txt
inst/extdata/simulate_rad_data.R man/AddAlleleFreqByTaxa.Rd man/AddAlleleFreqHWE.Rd man/AddAlleleFreqMapping.Rd man/AddAlleleLinkages.Rd man/AddGenotypeLikelihood.Rd man/AddGenotypePosteriorProb.Rd man/AddGenotypePriorProb_ByTaxa.Rd man/AddGenotypePriorProb_Even.Rd man/AddGenotypePriorProb_HWE.Rd man/AddGenotypePriorProb_Mapping2Parents.Rd man/AddPCA.Rd man/AddPloidyChiSq.Rd man/AddPloidyLikelihood.Rd man/AddPriorTimesLikelihood.Rd man/CanDoGetWeightedMeanGeno.Rd man/EstimateContaminationRate.Rd man/ExportGAPIT.Rd man/GetLikelyGen.Rd man/GetTaxa.Rd man/GetWeightedMeanGenotypes.Rd man/IterateHWE.Rd man/LocusInfo.Rd man/MakeTasselVcfFilter.Rd man/MergeRareHaplotypes.Rd man/OneAllelePerMarker.Rd man/PipelineMapping2Parents.Rd man/RADdata.Rd man/SetBlankTaxa.Rd man/StripDown.Rd man/SubsetByLocus.Rd man/SubsetByTaxon.Rd man/TestOverdispersion.Rd man/VCF2RADdata.Rd man/exampleRAD.Rd man/readHMC.Rd man/readStacks.Rd man/readTASSELGBSv2.Rd man/readTagDigger.Rd
src/BestGenos.cpp
src/RcppExports.cpp
src/ThirdDimProd.cpp
vignettes/polyRADtutorial.Rmd
vignettes/polyRADtutorial.html
vignettes/polyRADtutorial.md
vignettes/polyRADtutorial_files/figure-markdown_github/unnamed-chunk-10-1.png
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vignettes/render_vignettes.R
vignettes/subsetdata.py
lvclark/polyRAD documentation built on Dec. 12, 2018, 11:49 p.m.