Man pages for machalen/AnalysisFunctions
Package with basic analysis functions for genomic data
| AnalysisFunctions-package | Package with basic analysis functions for genomic data |
| Complete.Human.GO.nd.KEGG | Functional annotation of RNA-seq data with GO and KEGG... |
| Complete.Mouse.GO.nd.KEGG | Functional annotation of RNA-seq data with GO and KEGG... |
| createTargets | Target file with sample anotation |
| data4TyersMake | Generate a data frame with the data4Tyers format from array... |
| DeleteCtrlsGral | Delete probeID that correspond to controls |
| gct.data4Tyers | gct file for GSEA analysis using data4Tyers |
| generate_cls | Generate cls format files |
| generate_gct | Generate gct format files |
| generate_rnk | Generate rnk format file |
| GSEA_genes_report | Function to make a GSEA summary table with Mouse gene symbol... |
| GSEA_report_ENSEMBL | Function to make a GSEA summary table with Mouse gene symbol... |
| GSEA_report_HS | Function to make a GSEA summary table with human gene symbol... |
| GSEA_report_MS | Function to make a GSEA summary table with Mouse gene symbol... |
| MaxMin.Sym.Row | Filter out duplicated genes getting the maximum or the... |
| RNAseq.data4Tyers | Generate a data frame with the data4Tyers format from RNAseq... |
| Unique.Sym.Estimates | Resolve duplicated gene IDs by computing the mean or the... |
