Unique.Sym.Estimates: Resolve duplicated gene IDs by computing the mean or the...

Description Usage Arguments Details Value Author(s)

View source: R/Unique.Sym.Estimates.R

Description

This function removes duplicated gene IDs by calculating the mean or the median of their expression values

Usage

1
Unique.Sym.Estimates(Annot.Table, operator = "Mean", colName = "Symbol")

Arguments

Annot.Table

Numeric data frame with a unique column of characters corresponding to the gene IDs, the other columns are samples.

operator

Mean or median operator to resolve repeated gene IDs

colName

Name of the column that contains gene symbols.

Details

A gene expression matrix can have repeated gene IDs due to exon or probe annotation. Some methods need to be unique gene ID based. To summarize expression values to a single geneID the mean and median operators can be applied.

Value

Numeric data frame where row names are gene IDs

Author(s)

Magdalena Arnal Segura <marnal@imim.es>


machalen/AnalysisFunctions documentation built on Nov. 11, 2019, 10:26 a.m.