gct.data4Tyers: gct file for GSEA analysis using data4Tyers
In machalen/AnalysisFunctions: Package with basic analysis functions for genomic data

Function to generate .gct files from the data4Tyers object

1	gct.data4Tyers(data4Tyers, Symb.col = "AffyID", gct)

`data4Tyers`	data4Tyers generated during the microarray analysis pipeline. It can be recovered using read.csv2
`Symb.col`	Column with gene IDs used in the GSEA analysis
`gct`	file path and file name of the output gct.

This function uses the template data4Tyers in order to make easy the generation of the gct files for the GSEA analysis.

gct format file

Magdalena Arnal Segura <marnal@imim.es>

https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats

machalen/AnalysisFunctions documentation built on Nov. 11, 2019, 10:26 a.m.

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