gct.data4Tyers: gct file for GSEA analysis using data4Tyers

Description Usage Arguments Details Value Author(s) References

View source: R/gct.data4Tyers.R

Description

Function to generate .gct files from the data4Tyers object

Usage

1
gct.data4Tyers(data4Tyers, Symb.col = "AffyID", gct)

Arguments

data4Tyers

data4Tyers generated during the microarray analysis pipeline. It can be recovered using read.csv2

Symb.col

Column with gene IDs used in the GSEA analysis

gct

file path and file name of the output gct.

Details

This function uses the template data4Tyers in order to make easy the generation of the gct files for the GSEA analysis.

Value

gct format file

Author(s)

Magdalena Arnal Segura <marnal@imim.es>

References

https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats


machalen/AnalysisFunctions documentation built on Nov. 11, 2019, 10:26 a.m.