data4TyersMake: Generate a data frame with the data4Tyers format from array...

In machalen/AnalysisFunctions: Package with basic analysis functions for genomic data

Description

Generate a data frame with the data4Tyers format to run the macro in excel.

Usage

data4TyersMake(est_noctrls.annot, cond, fit.main, contrast)

Arguments

est_noctrls.annot	Matrix with the intensity values of the microarray together with the annotation data made with the function annotatetableC.
cond	Vector with sample conditions used in the contrasts, sample order with the same order as the expression matrix.
fit.main	Model to use in limma analysis.
contrast	List of vectors with each contrast to use.

Details

Build a data frame with the columns required to run the macro data4Tyers. This data frame contains information regarding gene anotation, statistics of the analysis and expression values of microarray data normalized with Robust Multi-array Average (RMA).

Value

data.frame object

Author(s)

Magdalena Arnal Segura <[e-mail]>

machalen/AnalysisFunctions documentation built on Nov. 11, 2019, 10:26 a.m.