generate_gct: Generate gct format files
In machalen/AnalysisFunctions: Package with basic analysis functions for genomic data
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
This function generates .gct format files to use in the GSEA analysis.
Usage
1
generate_gct(matriu, gct)
Arguments
matriu
Numeric expression matrix with rows genes and columns samples
gct
Path and name of the output file with .gct termination
Details
The .gct file contains information about the expression values of genes to be considered in the GSEA analysis. The order of samples in the columns of the matrix has to be coincident with the name of the conditions in the cls file.
Value
.gct format file
Author(s)
Magdalena Arnal Segura <marnal@imim.es>
References
https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats
machalen/AnalysisFunctions documentation built on Nov. 11, 2019, 10:26 a.m.
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Description Usage Arguments Details Value Author(s) References
Description
This function generates .gct format files to use in the GSEA analysis.
Usage
1 | generate_gct(matriu, gct)
|
Arguments
matriu |
Numeric expression matrix with rows genes and columns samples |
gct |
Path and name of the output file with .gct termination |
Details
The .gct file contains information about the expression values of genes to be considered in the GSEA analysis. The order of samples in the columns of the matrix has to be coincident with the name of the conditions in the cls file.
Value
.gct format file
Author(s)
Magdalena Arnal Segura <marnal@imim.es>
References
https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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