Files in mammerlin/sangeranalyseR
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
.gitignore
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/count.stop.codons.R
R/group.reads.R
R/make.consensus.seqs.R
R/make.readset.R
R/merge.reads.R
R/secondary.peaks.R
R/summarise.abi.file.R
R/summarise.abi.folder.R
R/summarise.merged.read.R
R/trim.mott.R
R/trim.to.reference.R
R/util.R
data/drosophila.RData
images/aln2.png
images/aln2.tiff
images/aln3.png
images/aln3.tiff
images/chromatogram.png
images/consensus.png
images/consensus.tiff
images/consensus2.png
images/consensus2.tiff
images/plot1.png
images/plot2.png
images/plot3.png
images/plot4.png
images/tree1.png
man/count.stop.codons.Rd
man/make.consensus.seqs.Rd
man/make.readset.Rd
man/make.readsets.Rd
man/merge.reads.Rd
man/secondary.peaks.Rd
man/summarise.abi.file.Rd
man/summarise.abi.folder.Rd
man/summarise.merged.read.Rd
man/trim.mott.Rd
man/trim.to.reference.Rd
sangeranalyseR.Rproj
test_data/Allolobophora_chlorotica/ACHLO006-09[LCO1490_t1,HCO2198_t1]_F.ab1
test_data/Allolobophora_chlorotica/ACHLO006-09[LCO1490_t1,HCO2198_t1]_R.ab1
test_data/Allolobophora_chlorotica/ACHLO007-09[LCO1490_t1,HCO2198_t1]_F.ab1
test_data/Allolobophora_chlorotica/ACHLO007-09[LCO1490_t1,HCO2198_t1]_R.ab1
test_data/Allolobophora_chlorotica/ACHLO040-09[LCO1490_t1,HCO2198_t1]_F.ab1
test_data/Allolobophora_chlorotica/ACHLO040-09[LCO1490_t1,HCO2198_t1]_R.ab1
test_data/Allolobophora_chlorotica/ACHLO041-09[LCO1490_t1,HCO2198_t1]_F.ab1
test_data/Allolobophora_chlorotica/ACHLO041-09[LCO1490_t1,HCO2198_t1]_R.ab1
test_data/Allolobophora_chlorotica/RBNII384-13[C_LepFolF,C_LepFolR]_F.ab1
test_data/Allolobophora_chlorotica/RBNII384-13[C_LepFolF,C_LepFolR]_R.ab1
test_data/Allolobophora_chlorotica/RBNII395-13[C_LepFolF,C_LepFolR]_F.ab1
test_data/Allolobophora_chlorotica/RBNII395-13[C_LepFolF,C_LepFolR]_R.ab1
test_data/Allolobophora_chlorotica/RBNII396-13[C_LepFolF,C_LepFolR]_F.ab1
test_data/Allolobophora_chlorotica/RBNII396-13[C_LepFolF,C_LepFolR]_R.ab1
test_data/Allolobophora_chlorotica/RBNII397-13[C_LepFolF,C_LepFolR]_F.ab1
test_data/Allolobophora_chlorotica/RBNII397-13[C_LepFolF,C_LepFolR]_R.ab1
test_data/Allolobophora_chlorotica/TRACE_FILE_INFO.txt
test_data/Drosophila_melanogaster/BBDCN941-10[C_LepFolF,C_LepFolR]_F.ab1
test_data/Drosophila_melanogaster/BBDCN941-10[C_LepFolF,C_LepFolR]_R.ab1
test_data/Drosophila_melanogaster/BBDEE689-10[LCO1490_t1,HCO2198_t1]_F.ab1
test_data/Drosophila_melanogaster/BBDEE689-10[LCO1490_t1,HCO2198_t1]_R.ab1
test_data/Drosophila_melanogaster/PHDIP946-11[LCO1490_t1,HCO2198_t1]_F.ab1
test_data/Drosophila_melanogaster/PHDIP946-11[LCO1490_t1,HCO2198_t1]_R.ab1
test_data/Drosophila_melanogaster/TDWGB557-10[C_LepFolF,C_LepFolR]_F.ab1
test_data/Drosophila_melanogaster/TDWGB557-10[C_LepFolF,C_LepFolR]_R.ab1
test_data/Drosophila_melanogaster/TDWGB669-10[C_LepFolF,C_LepFolR]_F.ab1
test_data/Drosophila_melanogaster/TDWGB669-10[C_LepFolF,C_LepFolR]_R.ab1
test_data/Drosophila_melanogaster/TRACE_FILE_INFO.txt
test_data/README.md
tests/testthat.R
tests/testthat/test_stops.R
tests/testthat/test_trimming.R
