trim.to.reference: Trim an alignment to the limits of a supplied reference...
In mammerlin/sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
Description
This function profile aligns the alignment to the
reference sequence. It then trims the alignment to the limits of the
reference sequence, and returns the trimmed alignment.
Usage
1
trim.to.reference(alignment, reference)
Arguments
alignment
a DNAStringSet object
reference
a DNA sequence as a DNAString sequence
mammerlin/sangeranalyseR documentation built on May 13, 2019, 1:08 p.m.
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Description
This function profile aligns the alignment to the reference sequence. It then trims the alignment to the limits of the reference sequence, and returns the trimmed alignment.
Usage
1 | trim.to.reference(alignment, reference)
|
Arguments
alignment |
a DNAStringSet object |
reference |
a DNA sequence as a DNAString sequence |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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