Files in marcalva/diem
Debris-Containing Droplet Identification using EM
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/data.R
R/debris_id.R
R/em.R
R/filter.R
R/init_clust.R
R/normalize.R
R/objects.R
R/plotting.R
R/post.R
R/utils.R
R/var.R
README.md
cleanup
configure
configure.ac
data/mb_small.rda
man/Alpha.Rd
man/SCE-class.Rd
man/assign_clusters.Rd
man/barcode_rank_plot.Rd
man/call_targets.Rd
man/clusters.Rd
man/condense_labs.Rd
man/convert_to_seurat.Rd
man/create_SCE.Rd
man/de_basic.Rd
man/de_ttest.Rd
man/de_ttest_all.Rd
man/debris_genes.Rd
man/divide_by_colsum.Rd
man/droplet_data.Rd
man/estimate_dbr_score.Rd
man/fill_counts.Rd
man/filter_genes.Rd
man/fraction_log.Rd
man/gene_data.Rd
man/get_clean_ids.Rd
man/get_gene_pct.Rd
man/get_pcs.Rd
man/get_removed_ids.Rd
man/get_var_genes.Rd
man/init.Rd
man/mb_small.Rd
man/merge_size.Rd
man/norm_counts.Rd
man/normalize_data.Rd
man/params_frm_clust.Rd
man/plot_clust.Rd
man/plot_data.Rd
man/plot_dbr_score.Rd
man/plot_umi_gene.Rd
man/raw_counts.Rd
man/read_10x.Rd
man/run_em.Rd
man/run_pca.Rd
man/set_debris_test_set.Rd
man/sum_log.Rd
man/summarize_clusters.Rd
man/top_genes.Rd
man/z_table.Rd
src/DirMultEM.cpp
src/Makevars.in
src/Makevars.win
src/MultEM.cpp
src/MultEM.h
src/RcppExports.cpp
src/utils.cpp
src/utils.h
src/var.cpp
src/var.h
tests/testdata/barcodes.tsv.gz
tests/testdata/features.tsv.gz
tests/testdata/matrix.mtx.gz
tests/testthat.R
tests/testthat/test_em.R
tests/testthat/test_filters.R
tests/testthat/test_id.R
tests/testthat/test_init.R
vignettes/diem.Rmd
