debris_genes: Return the differentially expression results for debris genes
In marcalva/diem: Debris-Containing Droplet Identification using EM

debris_genes

R Documentation

Return the differentially expression results for debris genes

Return the data frame stored in the slot debris_genes. This contains the results of the differential expression analysis, including

diff: Difference in proportion of gene expression between the droplets in the debris and cell type clusters
logFC: log2 fold change between the droplets in the debris and cell type clusters
mu1: Mean of gene expression proportion in the debris droplets
mu2: Mean of gene expression proportion in the cell type droplets
t: t statistic
p: P value
gene: Gene name
p_adj: P value adjusted for multiple testing

debris_genes(x, p_adj = 0.05, logFC = 0)

`x`	An SCE object.
`p_adj`	Return only rows (genes) with an adjusted p-value less than this value.
`logFC`	Return only rows (genes) with a log fold-change greater than this value.