top_genes: Get top up-regulated genes per cluster
In marcalva/diem: Debris-Containing Droplet Identification using EM
top_genes R Documentation
Get top up-regulated genes per cluster
Description
Extract marker genes for each cluster by ranking them based on the
difference of their proportion means from the multinomial
distributions estimated by DIEM. Output the top top_n
genes for each cluster.
Usage
top_genes(x, top_n = 20)
Arguments
x
An SCE object.
top_n
Number of top DE genes to return.
Value
An SCE object.
marcalva/diem documentation built on Jan. 1, 2023, 2:33 a.m.
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| top_genes | R Documentation |
Get top up-regulated genes per cluster
Description
Extract marker genes for each cluster by ranking them based on the
difference of their proportion means from the multinomial
distributions estimated by DIEM. Output the top top_n
genes for each cluster.
Usage
top_genes(x, top_n = 20)
Arguments
x |
An SCE object. |
top_n |
Number of top DE genes to return. |
Value
An SCE object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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