run_pca: Run PCA
In marcalva/diem: Debris-Containing Droplet Identification using EM
run_pca R Documentation
Run PCA
Description
Get PCs from normalized counts.
Usage
run_pca(x, n_pcs = 30, seedn = 1)
Arguments
x
An SCE object.
many genes detected.
n_pcs
Number of PCs to calculate.
seedn
The seed to set for irlba PCA calculation. It is set to
1 for reproducibility but can be set to NULL for a random
initialization.
Value
An SCE object with PCs
marcalva/diem documentation built on Jan. 1, 2023, 2:33 a.m.
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| run_pca | R Documentation |
Run PCA
Description
Get PCs from normalized counts.
Usage
run_pca(x, n_pcs = 30, seedn = 1)
Arguments
x |
An SCE object. many genes detected. |
n_pcs |
Number of PCs to calculate. |
seedn |
The seed to set for irlba PCA calculation. It is set to 1 for reproducibility but can be set to NULL for a random initialization. |
Value
An SCE object with PCs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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