get_removed_ids: Return IDs of removed droplets
In marcalva/diem: Debris-Containing Droplet Identification using EM
get_removed_ids R Documentation
Return IDs of removed droplets
Description
Return the droplet IDs in the test set that have been removed
by DIEM.
The function call_targets must be run beforehand.
Usage
get_removed_ids(x, min_genes = 200)
Arguments
x
An SCE object.
min_genes
The minimum number of genes detected for a
droplet to be output. Useful if a threshold was used to call
targets, as droplets below would never be considered. By
default is set at 200.
Value
A character vector with the called droplet IDs.
marcalva/diem documentation built on Jan. 1, 2023, 2:33 a.m.
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| get_removed_ids | R Documentation |
Return IDs of removed droplets
Description
Return the droplet IDs in the test set that have been removed
by DIEM.
The function call_targets must be run beforehand.
Usage
get_removed_ids(x, min_genes = 200)
Arguments
x |
An SCE object. |
min_genes |
The minimum number of genes detected for a droplet to be output. Useful if a threshold was used to call targets, as droplets below would never be considered. By default is set at 200. |
Value
A character vector with the called droplet IDs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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