droplet_data: Return the droplet data from an SCE object
In marcalva/diem: Debris-Containing Droplet Identification using EM

droplet_data

R Documentation

Return the droplet data from an SCE object

Description

Return droplet data. This contains data such as number of counts and genes in each droplet, as well as some of the output from the filtering, such as whether the droplet is classified as debris or cell/nucleus. The parameter min_counts filters out droplets (rows) by removing those with counts below this number. By default, returns all droplets in the test set. To return clean droplets, set the type parameter to 'clean', to return debris droplets in the test set, set to 'debris', and to return all droplets in the data set, set to 'all'.

Usage

droplet_data(x, min_counts = 1, type = "test")

Arguments

`x`	An SCE object.
`min_counts`	Minimum number of read counts a droplet must have to be output.
`type`	One of either 'test' (default), 'clean', 'debris', or 'all'. specifying how to subset the data frame to include only those droplets. The droplets in 'clean' and 'debris' make up the droplets in 'test'. If 'all', returns all droplets.