Files in marchinilab/SDAtools
SDAtools: A toolkit for SDA
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/load_results.R
R/plotting.R
R/run_SDA.R
R/simulate.R
README.md
SDAtools.Rproj
data-raw/.gitignore
data-raw/README.md
data-raw/simulation_results/command.txt
data-raw/simulation_results/it200/A
data-raw/simulation_results/it200/S1
data-raw/simulation_results/it200/X1
data-raw/simulation_results/it200/free_energy
data-raw/simulation_results/log.txt
data/random_500_gene_names.rda
data/results.rda
man/PIP_component_distribution.Rd
man/PIP_distribution.Rd
man/PIP_threshold_distribution.Rd
man/check_convergence.Rd
man/check_simulation_scores.Rd
man/export_data.Rd
man/genome_loadings.Rd
man/get.location.Rd
man/highest_components.Rd
man/highest_genes.Rd
man/load_chromosome_lengths.Rd
man/load_gene_locations.Rd
man/load_results.Rd
man/loading_distribution.Rd
man/plot_PIP.Rd
man/plot_PIP_change.Rd
man/plot_free_energy.Rd
man/plot_free_energy_change.Rd
man/plot_loadings.Rd
man/plot_maximums.Rd
man/plot_scores.Rd
man/plot_scree.Rd
man/random_500_gene_names.Rd
man/results.Rd
man/reverselog_trans.Rd
man/run_SDA.Rd
man/scores_distribution.Rd
man/simulate_2D_data.Rd
vignettes/vignette.Rmd
vignettes/vignette.md
vignettes/vignette_files/figure-gfm/compare-1.png
vignettes/vignette_files/figure-gfm/convergence-1.png
vignettes/vignette_files/figure-gfm/distributions-1.png
vignettes/vignette_files/figure-gfm/distributions-2.png
vignettes/vignette_files/figure-gfm/distributions-3.png
vignettes/vignette_files/figure-gfm/distributions-4.png
vignettes/vignette_files/figure-gfm/distributions-5.png
vignettes/vignette_files/figure-gfm/distributions-6.png
vignettes/vignette_files/figure-gfm/distributions-7.png
vignettes/vignette_files/figure-gfm/manhatten-1.png
vignettes/vignette_files/figure-gfm/manhatten-2.png
vignettes/vignette_files/figure-gfm/specific-1.png
vignettes/vignette_files/figure-gfm/specific-2.png
