train_preprocess_pipe: Train preprocess pipeline
In markgene/yamatClassifier: Yet Another Methylation Array Toolkit: Classifier
View source: R/train_preprocess_pipe.R
train_preprocess_pipe R Documentation
Train preprocess pipeline
Description
Preprocess for the training/reference data set from IDAT file to beta values.
Notice batch effect correction is not included.
Usage
train_preprocess_pipe(idat_dir, targets, output, overwrite = FALSE)
Arguments
idat_dir
IDAT file directory.
targets
data.frame of targets. See read.metharray.exp.
output
output directory.
overwrite
A bool if overwrite the result files.
Value
A S3 object of YamatClassifierTrainer class.
markgene/yamatClassifier documentation built on Oct. 14, 2024, 2:36 a.m.
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View source: R/train_preprocess_pipe.R
| train_preprocess_pipe | R Documentation |
Train preprocess pipeline
Description
Preprocess for the training/reference data set from IDAT file to beta values. Notice batch effect correction is not included.
Usage
train_preprocess_pipe(idat_dir, targets, output, overwrite = FALSE)
Arguments
idat_dir |
IDAT file directory. |
targets |
|
output |
output directory. |
overwrite |
A bool if overwrite the result files. |
Value
A S3 object of YamatClassifierTrainer class.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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