API for mathewchamberlain/veni
Generates QC plots, performs ambient RNA removal, and enhanced differential from single cell RNA sequencing data
| Global functions | |
|---|---|
| BatchProblemPlot | Man page Source code |
| CellBarPlot | Man page Source code |
| CoverageBoxPlot | Man page Source code |
| Decontaminate | Man page Source code |
| DepthBoxPlot | Man page Source code |
| DepthPlot | Man page Source code |
| DepthPlotComparison | Man page Source code |
| FilterBackgroundMatrix | Man page Source code |
| FilterBarcodes | Man page |
| FilterMito | Man page Source code |
| GeneBoxPlot | Man page Source code |
| GenerateLbls | Man page Source code |
| GenerateSeuratObject | Man page Source code |
| GetBackground | Man page Source code |
| GetBackgroundFromMatrix | Man page Source code |
| GetBackgroundMatrix | Man page Source code |
| GetCutoffs | Man page Source code |
| GetGeneFromNetwork | Man page Source code |
| GetMito | Man page Source code |
| HClustBackgroundMatrix | Man page Source code |
| InspectBackground | Man page Source code |
| InspectBackgroundGenes | Man page Source code |
| InspectBackgroundMatrix | Man page Source code |
| JackD | Man page Source code |
| LoadTxt | Man page |
| LoadTxtFolder | Man page |
| MitoBoxPlot | Man page Source code |
| QCPlots | Man page Source code |
| Read10Xh5 | Man page |
| Read10Xh5Folder | Man page |
| ReadCelseq | Man page |
| ReadDeconth5 | Man page |
| ReadDeconth5Folder | Man page |
| ReadIndrop | Man page |
| ReadIndropFolder | Man page |
| RegressMito | Man page Source code |
| SaveCountsToH5 | Man page Source code |
| SaveNetworkH5 | Man page Source code |
| array_split | Man page Source code |
