DepthBoxPlot: Plot a boxplot for sequencing depth
In mathewchamberlain/veni: Generates QC plots, performs ambient RNA removal, and enhanced differential from single cell RNA sequencing data
Description
Usage
Arguments
Value
See Also
Description
Plot a boxplot for sequencing depth
Usage
1
DepthBoxPlot(E, order.by = c("average depth", "mito percentage")[1])
Arguments
E
Count matrix (see ?Read_h5)
order.by
Order by a quantity associated with each sample. Options are "average depth" or "mito percentage", default is AvgDepth.
Value
ggplot objects ordered by average depth
See Also
GeneBoxPlot; CoverageBoxPlot
mathewchamberlain/veni documentation built on Oct. 9, 2020, 2:30 a.m.
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Description Usage Arguments Value See Also
Description
Plot a boxplot for sequencing depth
Usage
1 | DepthBoxPlot(E, order.by = c("average depth", "mito percentage")[1])
|
Arguments
E |
Count matrix (see ?Read_h5) |
order.by |
Order by a quantity associated with each sample. Options are "average depth" or "mito percentage", default is AvgDepth. |
Value
ggplot objects ordered by average depth
See Also
GeneBoxPlot; CoverageBoxPlot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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