MitoBoxPlot: Plot a boxplot for the fraction of mitochondrial rna

In mathewchamberlain/veni: Generates QC plots, performs ambient RNA removal, and enhanced differential from single cell RNA sequencing data

Description

Plot a boxplot for the fraction of mitochondrial rna

Usage

MitoBoxPlot(
  E,
  order.by = c("average depth", "mito percentage")[1],
  choose = "all"
)

Arguments

E	Count matrix (see ?Read_h5)
order.by	Order by a quantity associated with each sample. Options are "AvgDepth" or "Mito", default is AvgDepth.
choose	See ?GetMito or ?FilterMito

Value

ggplot objects of genes detected ordered by average depth

See Also

GeneBoxPlot; CoverageBoxPlot

mathewchamberlain/veni documentation built on Oct. 9, 2020, 2:30 a.m.