JackD: Jackknife Differential Expression Analysis

In mathewchamberlain/veni: Generates QC plots, performs ambient RNA removal, and enhanced differential from single cell RNA sequencing data

Description

Jackknife Differential Expression Analysis

Usage

JackD(E, Samples, Disease, Identities, do.par = F, num.cores = 1)

Arguments

E	A gene by cell expression matrix
Samples	A character vector of samples
Disease	A character vector of disease labels
Identities	A character vector of cell type or cluster labels
do.par	if TRUE, code is run in parallel on all available cores minus one
num.cores	optionally, user can hard set the number of cores to use

Value

a DEG table Jackknifed

mathewchamberlain/veni documentation built on Oct. 9, 2020, 2:30 a.m.