get.count.matrix: Get a count matrix from bam files that match a certain...
In matthiasheinig/seqQTL: Package for preprocessing sequencing based traits for QTL analysis
Description
Usage
Arguments
Value
Description
Get a count matrix from bam files that match a certain filename pattern
Usage
1
get.count.matrix(granges, dir, pattern)
Arguments
granges
GRanges object in which to count reads
dir
name of the directory that contains the bam files
pattern
regulator expression to identify bam files in the directory
Value
a count matrix with rows for each element of the GRanges object and
columns for each bam file
matthiasheinig/seqQTL documentation built on May 21, 2019, 1:16 p.m.
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Description Usage Arguments Value
Description
Get a count matrix from bam files that match a certain filename pattern
Usage
1 | get.count.matrix(granges, dir, pattern)
|
Arguments
granges |
GRanges object in which to count reads |
dir |
name of the directory that contains the bam files |
pattern |
regulator expression to identify bam files in the directory |
Value
a count matrix with rows for each element of the GRanges object and columns for each bam file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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