get.rpkm: Normalize to reads per kilobase per million sequences

Description Usage Arguments Value

View source: R/gff.R

Description

Normalize to reads per kilobase per million sequences

Usage

1
get.rpkm(annotation, counts)

Arguments

annotation

GRanges object with exons that have a "gene_id" field in the meta data

counts

read count matrix per gene. The rownames have to be the same as those used in the gene_id field.

Value

matrix of RPKM values


matthiasheinig/seqQTL documentation built on May 21, 2017, 11:03 p.m.