merge.peaks: Merge MACS peaks calls from files in a directory
In matthiasheinig/seqQTL: Package for preprocessing sequencing based traits for QTL analysis

Merge MACS peaks calls from files in a directory

1
2
3

## S3 method for class 'peaks'
merge(dir = "results/current/macs", FDR = 5,
  pattern = "peaks.xls$")

`dir`	path to the directory that holds the peak call files
`FDR`	threshold for the false discovery rate
`pattern`	regular expression to identify the peak files

a GRanges object with the merged peak regions

matthiasheinig/seqQTL documentation built on May 21, 2019, 1:16 p.m.

matthiasheinig/seqQTL index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description