getCNt: get the main copynumber state for each chromosome
In maxwell-lab/HRDex:
Description
Usage
Arguments
Details
Value
Examples
Description
get the main copynumber state for each chromosome
Usage
1
getCNt(seq.dat)
Arguments
seq.dat
the data.frame of sequencing data
Details
Get the main copynumber state for each chromosome. Calculate the total proportion of
the chromosome associated with each unique copynumber state; return the copynumber state that is most
represented.
Value
a data.frame containing the main copynumber state for each input chromosome
Examples
1
2
seq.dat <- preprocessHRD( seq.dat )
CN.dat <- getCNt( seq.dat )
maxwell-lab/HRDex documentation built on May 3, 2020, 9:01 p.m.
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Description Usage Arguments Details Value Examples
Description
get the main copynumber state for each chromosome
Usage
1 | getCNt(seq.dat)
|
Arguments
seq.dat |
the data.frame of sequencing data |
Details
Get the main copynumber state for each chromosome. Calculate the total proportion of the chromosome associated with each unique copynumber state; return the copynumber state that is most represented.
Value
a data.frame containing the main copynumber state for each input chromosome
Examples
1 2 | seq.dat <- preprocessHRD( seq.dat )
CN.dat <- getCNt( seq.dat )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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