hrd.stats: get hrd metrics
In maxwell-lab/HRDex:
Description
Usage
Arguments
Value
Examples
Description
get hrd metrics
Usage
1
hrd.stats(seq.dat, CN.dat, ref = "grch37")
Arguments
seq.dat
the preprocessed sequencing data
CN.dat
the copy number data
scaleTotal
optional: rescale the total to range of 0-100
type
optional: type of score to return, one of "sum" or "average"
Value
LOH, NTAIraw, NTAInorm, LST, total
Examples
1
seq.dat <- hrd.stats( )
maxwell-lab/HRDex documentation built on May 3, 2020, 9:01 p.m.
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Description Usage Arguments Value Examples
Description
get hrd metrics
Usage
1 | hrd.stats(seq.dat, CN.dat, ref = "grch37")
|
Arguments
seq.dat |
the preprocessed sequencing data |
CN.dat |
the copy number data |
scaleTotal |
optional: rescale the total to range of 0-100 |
type |
optional: type of score to return, one of "sum" or "average" |
Value
LOH, NTAIraw, NTAInorm, LST, total
Examples
1 | seq.dat <- hrd.stats( )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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