getLST: Compute the number of large state transition (LST) events
In maxwell-lab/HRDex:
Description
Usage
Arguments
Details
Value
Description
Compute the number of large state transition (LST) events
Usage
1
getLST(seq.dat)
Arguments
seq.dat
the data.frame of sequencing data
ploidy.dat
the data.frame of ploidy data
Details
raw LST is calculated as the number of segments where the gap between is < 3Mbp, each adjacent
segment is > 10Mbp, and the segments do not cross the centromere.
Value
the number of LST events
maxwell-lab/HRDex documentation built on May 3, 2020, 9:01 p.m.
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Description Usage Arguments Details Value
Description
Compute the number of large state transition (LST) events
Usage
1 | getLST(seq.dat)
|
Arguments
seq.dat |
the data.frame of sequencing data |
ploidy.dat |
the data.frame of ploidy data |
Details
raw LST is calculated as the number of segments where the gap between is < 3Mbp, each adjacent segment is > 10Mbp, and the segments do not cross the centromere.
Value
the number of LST events
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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